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University of Toronto Miller group Publications

Recent (2001- )

2009

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177. K. Franjic, M.L. Cowan, D. Kraemer, R.J.D. Miller, "Laser selective cutting of biological tissues by impulsive heat deposition through ultrafast vibrational excitations", Optics Express, 2009, 17(25), 22937-22959.

176. P.J.M. Johnson, V.I. Prokhorenko, R.J.D. Miller, "Stable UV to IR supercontinuum generation in calcium fluoride with conserved circular polarization states", Optics Express, 2009, 17(24), 21488-21496.

175. R.J.D. Miller, A. Paarmann, V.I. Prokhorenko, "Diffractive Optics Based Four-Wave, Six-Wave, ... , v-Wave Nonlinear Spectroscopy", Accounts of Chemical Research, 2009, 42(9), 1442-1451.

174. A. Paarmann, T. Hayashi, S. Mukamel, R.J.D. Miller, "Nonlinear response of vibrational excitons: Simulating the two-dimensional infrared spectrum of liquid water", J. Chem. Phys., 2009, 130(20), 204110.

173. V.I. Prokhorenko; A. Halpin, R.J.D. Miller, "Coherently-controlled two-dimensional photon echo electronic spectroscopy", Optics Express, 2009, 17(12), 9764-9779.

172. M. Harb, W. Peng, G. Sciaini, C.T.Hebeisen, R. Ernstorfer, M.A. Eriksson, M. G. Lagally, Kruglik, R.J.D. Miller, "Excitation of longitudinal and transverse coherent acoustic phonons in nanometer free-standing films of (001) Si", Phys. Rev. B, 2009, 79(9), 094301.

171. G. Sciaini, M. Harb, S.G. Kruglik, T. Payer, C.T. Hebeisen, F.J.M. zu Heringdorf, M. Yamaguchi, M. Horn-von Hoegen, R. Ernstorfer, and R.J.D. Miller, “Electronic Acceleration of Atomic Motions and Disordering in Bismuth,” Nature, 2009, 458(7234), 56-U2.

170. R. Ernstorfer, M. Harb, C.T. Hebeisen, G. Sciaini, T. Dartigalongue, and R.J.D. Miller, “Experimental Evidence for Electronic Bond Hardening of Gold”, Science, 2009, 323(5917), 1033 -1037.


2008

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169. R. J. Dwayne Miller and R. Memming, “Fundamentals in Photoelectrochemistry,” Nanostructured and Photoelectrochemical Systems for Solar Photon Conversion, eds. Mary D. Archer, Arthur J. Nozik (World Scientific Press, 2008).

168. C.T. Hebeisen, G. Sciaini, M. Harb, R. Ernstorfer, S.G. Kruglik, and R. J. Dwayne Miller, "Direct visualization of charge distributions during femtosecond laser ablation of a Si (100) surface," Phys. Rev. B 2008, 78, 081403/1-4.

167. A. Paarmann, T. Hayashi, S. Mukamel, and R. J. Dwayne Miller, “Probing Intermolecular Couplings in Liquid Water with 2DIR Photon Echo Spectroscopy,” J. Chem. Phys 2008, 128, 191103/1-5.

166. Y. Li, L. Huang, M. Hasegawa, Y. Tanimura and R. J. Dwayne Miller, “Two-Dimensional Fifth-Order Raman Spectroscopy of Liquid Formamide:  Experiment and Theory,” J. Chem. Phys. 2008, 128, 234507/1-15.

165. M. Harb, R. Ernstorfer, C.T. Hebeisen, G. Sciaini, W. Peng, T. Dartigalongue, M.A. Eriksson, M.G. Lagally, S.G. Kruglik, and R.J.D. Miller, “Electronically Driven Structure Changes of Si Captured by Femtosecond Electron Diffraction,” Phys. Rev. Lett. 2008, 100, 155504/1-4.

164. C.T. Hebeisen, G. Sciaini, M. Harb, R. Ernstorfer, T. Dartigalongue, S.G. Kruglik, and R.J.D. Miller, "Grating enhanced ponderomotive scattering for visualization and full characterization of femtosecond electron pulses," Opt. Express 2008, 16, 3334-3341.

163. S.M. Eaton, C.A. Merchant, R. Iyer, A.J. Zilkie, A.S. Helmy, J.S. Aitchison, P.R. Herman, D. Kraemer, R.J.D. Miller, C. Hnatovsky, and R.S. Taylor, “Raman gain from waveguides inscribed in KGd(WO4)2 by high repetition rate femtosecond laser," Appl. Phys. Lett. 2008, 92(8), 081105/1-3.

162. D. Kraemer, M.L. Cowan, A. Paarmann, N. Huse, E.T.J. Nibbering, T. Elsaesser, and R.J.D. Miller, “Temperature dependence of the two-dimensional infrared spectrum of liquid H2O,” Proc. Natl. Acad. Sci. USA 2008, 105(2), 437-442.


2007

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161. V.I. Prokhorenko, A.M. Nagy, L.S. Brown, and R.J.D. Miller, “On the mechanism of weak-field coherent control of retinal isomerization in bacteriorhodopsin,” Chem. Phys. 2007, 341(1-3), 296-309.

160.  C.A. Milne, Y. Li, and R.J.D. Miller, “Two Dimensional Fifth-Order Raman Spectroscopy: A New Tool for the Study of Liquid State Dynamics”, invited chapter in Time-Resolved Spectroscopy in Complex Liquids – An Experimental Perspective, Ed. Renato Torre (Springer Science+Business Media, LLC, New York) 2007, 1-72. 

159. C.T. Hebeisen, R. Ernstorfer, M. Harb, T. Dartigalongue, R.E. Jordan, L. Zhu, and R.J.D. Miller, “Characterization of Ultrashort Electron Pulses,” Ultrafast Phenomena XV, Springer Series in Chemical Physics, eds., P. Corkum, D. Jonas, R.J.D. Miller, A.M. Weiner (Springer-Verlag, Berlin Heidelberg) 2007, 88, 758-760.

158. R. Ernstorfer, M. Harb, T. Dartigalongue, C.T. Hebeisen, R.E. Jordan, L. Zhu, and R.J.D. Miller, “Femtosecond Electron Diffraction Study on the Heating and Melting Dynamics of Gold,” Ultrafast Phenomena XV, Springer Series in Chemical Physics, eds., P. Corkum, D. Jonas, R.J.D. Miller, A.M. Weiner (Springer-Verlag, Berlin Heidelberg) 2007, 88, 755-757.

157. V.I. Prokhorenko, A.M. Nagy, L.S. Brown, and R.J.D. Miller, “Experimental Coherent Control of Retinal Isomerization in Bacteriorhodopsin,” Ultrafast Phenomena XV, Springer Series in Chemical Physics, eds., P. Corkum, D. Jonas, R.J.D. Miller, A.M. Weiner (Springer-Verlag, Berlin Heidelberg) 2007, 88, 462-464.

156. A. Paarmann, D. Kraemer, M.L. Cowan, N. Huse, M. Harb, B.D. Bruner, J.R. Dwyer, E.T.J. Nibbering, T. Elsaesser, and R.J.D. Miller, “2D-IR Photon Echo Spectroscopy of Liquid H2O – Combination of Novel Nanofluidics and Diffractive Optics Deciphers Ultrafast Structural Dynamics,” Ultrafast Phenomena XV, Springer Series in Chemical Physics, eds., P. Corkum, D. Jonas, R.J.D. Miller, A.M. Weiner (Springer-Verlag, Berlin Heidelberg) 2007, 88, 335-337.

155. C.A. Milne, Y.L. Li, T.l.C. Jansen, L. Huang, and R.J.D. Miller, “Fifth-order Raman spectroscopy:  Liquid benzene,” Ultrafast Phenomena XV, Springer Series in Chemical Physics, eds., P. Corkum, D. Jonas, R.J.D. Miller, A.M. Weiner (Springer-Verlag, Berlin Heidelberg) 2007, 88, 297-299.

154. D. Kraemer, M.L. Cowan, R. Hua, K. Franjic, and R.J.D. Miller, “High Power Femtosecond IR Laser Source based on Noncollinear Optical Parametric Chirped Pulse Amplification,” Ultrafast Phenomena XV, Springer Series in Chemical Physics, eds., P. Corkum, D. Jonas, R.J.D. Miller, A.M. Weiner (Springer-Verlag, Berlin Heidelberg) 2007, 88, 98-100.

153. B. Girard, M. Cloutier, D.J. Wilson, C.M.L. Clokie, R.J.D. Miller, and B.C. Wilson, “Microtomographic Analysis of Healing of Femtosecond Laser Bone Calvarial Wounds Compared to Mechanical Instruments in Mice With and Without Application of BMP-7,” Laser. Surg. Med. 2007, 39, 458-467.

152. J. Dwyer, R.E. Jordan, C.T. Hebeisen, M. Harb, R. Ernstorfer, T. Dartigalongue, and R.J.D. Miller, “Experimental basics for femtosecond electron diffraction studies,” J. Mod. Optics 2007, 54(7), 923-942.

151. J. Dwyer, R.E. Jordan, C.T. Hebeisen, M. Harb, R. Ernstorfer, T. Dartigalongue, and R.J.D. Miller, “Femtosecond Electron Diffraction:  An Atomic Perspective of Condensed Phase Dynamics,” J. Mod. Optics 2007, 54(7), 905-922.

150. D. Kraemer, M. Cowan, R. Hua, K. Franjic, and R.J.D. Miller, “High Power Femtosecond Infrared Laser Source Based on Noncollinear Optical Parametric Chirped Pulse Amplification”, J. Opt. Soc. Am. B 2007, 24(4), 813-818.

149. B. Girard, D. Yu, M.R. Armstrong, B.C. Wilson, C.M.L. Clokie, and R.J.D. Miller, “Effects of Femtosecond Laser Irradiation on Osseous Tissues,” Lasers Surg. Med. 2007, 39, 273-285.


2006

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148. M. Harb, R. Ernstorfer, T. Dartigalongue, C.T. Hebeisen, R.E. Jordan, and R.J.D. Miller, “Carrier Relaxation and Lattice Heating Dynamics in Silicon Revealed by Femtosecond Electron Diffraction,” J. Phys. Chem. B 2006, 110, 25308-25313.

147. C.T. Hebeisen, R. Ernstorfer, M. Harb, T. Dartigalonge, R.E. Jordan, and R.J.D. Miller, “Femtosecond Electron Pulse Characterisation Using Laser Ponderomotive Scattering,” Optics Lett. 2006, 31(23), 3517-3519.

146. C.J. Milne, Y.L. Li, T.I.C. Jansen, L. Huang, and R.J.D. Miller, “Fifth-Order Raman Spectroscopy of Liquid Benzene: Experiment and Theory,” J. Phys. Chem. B 2006, 110(40), 19867-19876.

145. A.M. Nagy, V.I. Prokhorenko, R.J.D. Miller, “Do We Live in a Quantum World? Advances in Multidimensional Coherent Spectroscopies Refine Our Understanding of Quantum Coherences and Structural Dynamics of Biological Systems,” Current Opinion in Structural Biology 2006, 16(5), 654-663.

144. V.I. Prokhorenko, A.M. Nagy, S.A. Waschuk, L.S. Brown, R.R. Birge, and R.J.D. Miller, “Coherent Control of Retinal Isomerization in Bacteriorhodopsin,” Science 2006, 313(5791), 1257-1261.

143. D. Kraemer, R. Z. Hua, M. L. Cowan, K. Franjic and R. J. D. Miller, “Ultrafast Noncollinear Optical Parametric Chirped Pulse Amplification in KTiOAsO4,” Optics Lett. 2006, 31(7), 981-983.

142. J.R. Dwyer, C.T. Hebeisen, R. Ernstorfer, M. Harb, V. Deyirmenjian, R.E. Jordan, and R.J.D. Miller, “Femtosecond Electron Diffraction: ‘Making the Molecular Movie’,” Phil. Trans. R. Soc. A 2006, 364, 741-778.

141. M. Walther, V. Raicu, J.P. Ogilvie, R. Phillips, R. Kluger, R.J.D. Miller, “Determination of the Fe-CO Bond Energy in Myoglobin Using Heterodyne Detected Transient Thermal Phase Grating Spectroscopy,” J. Phys. Chem. B 2006, 109, 20605-20611.


2005

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140. N. Huse, B. D. Bruner, M.L. Cowan, J. Dreyer, E.T.J. Nibbering, R.J.D. Miller, T. Elsaesser, “Anharmonic Couplings Underlying the Ultrafast Vibrational Dynamics of Hydrogen Bonds in Liquids”, Phys. Rev. Lett. 2005, 95, 147402/1-4.

139. A.M. Nagy, V. Raicu, and R.J.D. Miller, “Nonlinear Optical Studies of Heme Protein Dynamics: Implications for Proteins as Hybrid States of Matter,” BBA - Proteins and Proteomics 2005, 1749(2), 148-172.

138. V.I. Prokhorenko, A.M. Nagy, and R.J.D. Miller, “Coherent Control of the Population Transfer in Complex Solvated Molecules at Weak Excitation. 1. An Experimental Study,” J. Chem. Phys. 2005, 122(18), 184502 (11 pages).

137. B.J. Siwick, A.A. Green, C.T. Hebeisen, and R.J.D. Miller, “Characterization of Ultrashort Electron Pulses by Electron-Laser Pulse Cross-Correlation,” Optics Lett. 2005, 30(9), 1057-1059.

136. M.L. Cowan, B.D. Bruner, N. Huse, J.R. Dwyer, B. Chugh, E.T.J. Nibbering, T. Elsaesser, and R.J.D. Miller, “Ultrafast Memory Loss and Energy Redistribution in the Hydrogen Bond Network of Liquid H2O,” Nature 2005, 434(7030), 199-202.

135. B. Girard, D. Yu, M.R. Armstrong, B.C. Wilson, C.M.L. Clokie, and R.J.D. Miller, “Femtosecond Laser Effects on Osseous Tissues,” Ultrafast Phenomena XIV, Springer Series in Chemical Physics, eds., T. Kobayashi, T. Okada, T. Kobayashi, K.A. Nelson, S. De Silvestri (Springer-Verlag, Berlin Heidelberg) 2005, 816-818.

134. V.I. Prokhorenko, R. van Grondelle, and R.J.D. Miller, “Photon Echo Study of the Electron-Phonon Coupling Strength in Molecules and Molecular Aggregates,” Ultrafast Phenomena XIV, Springer Series in Chemical Physics, eds., T. Kobayashi, T. Okada, T. Kobayashi, K.A. Nelson, S. De Silvestri (Springer-Verlag, Berlin Heidelberg) 2005, 601-603.

133. N. Huse, B.D. Bruner, M.L. Cowan, J. Dreyer, E.T.J. Nibbering, T. Elsaesser, and R.J.D. Miller, “Heterodyne 2D-IR Photon Echo Spectroscopy of Multi-Level OH Stretching Coherences in Hydrogen Bonds,” Ultrafast Phenomena XIV, Springer Series in Chemical Physics, eds., T. Kobayashi, T. Okada, T. Kobayashi, K.A. Nelson, S. De Silvestri (Springer-Verlag, Berlin Heidelberg) 2005, 407-409.

132. J.R. Dwyer, R.E. Jordan, B.J. Siwick, C.T. Hebeisen, and R.J.D. Miller, “Femtosecond Electron Diffraction: Towards Making the ‘Molecular Movie’,” Ultrafast Phenomena XIV, Springer Series in Chemical Physics, eds., T. Kobayashi, T. Okada, T. Kobayashi, K.A. Nelson, S. De Silvestri (Springer-Verlag, Berlin Heidelberg) 2005, 144-148.

131. V. Raicu, D.B. Jansma, R.J.D. Miller, and J.D. Friesen, “Protein Interaction Quantified In Vivo by Spectrally Resolved Fluorescence Resonance Energy Transfer,” Biochem. J. 2005, 385(1), 265-277.


2004

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130. M. Terazima, N. Hirota, S.E. Braslavsky, A. Mandelis, S.E. Bialkowski, G.J. Diebold, R.J.D. Miller, D. Fournier, R.A. Palmer, and A. Tam, “Quantities, Terminology, and Symbols in Photothermal and Related Spectroscopies,” Pure Appl. Chem. 2004, 76(6), 1083-1118.

129. S. Yang, R. Hua, C. Milne, B. Bruner, and R.J.D. Miller, “Multipass Ti:sapphire Amplifier Based on a Parabolic Mirror,” Optics Comm. 2004, 234(1-6), 385-390.

128. M.L. Cowan, J.P. Ogilvie, and R.J.D. Miller, “Two-dimensional Spectroscopy Using Diffractive Optics Based Phased-locked Photon Echoes,” Chem. Phys. Lett. 2004, 386(1-3), 184-189.

127. B.J. Siwick, J.R. Dwyer, R.E. Jordan, and R.J.D. Miller, “Femtosecond Electron Diffraction Studies of Strongly Driven Structural Phase Transitions,” Chemical Physics 2004, 299(2-3), 285-305.


2003

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126. B.J. Siwick, J.R. Dwyer, R.E. Jordan, and R.J.D. Miller “An Atomic-Level View of Melting Using Femtosecond Electron Diffraction,” Science 2003 302(5649), 1382-1385.

125. B.J. Siwick, J.R. Dwyer, R.E. Jordan, and R.J.D. Miller, “Response to "Comment on ‘Ultrafast Electron Optics:  Propagation Dynamics of Femtosecond Electron Packets’",” J. Appl. Phys. 2003, 94(1), 807-808.

124. K.J. Kubarych, C.J. Milne, and R.J.D. Miller, “Fifth Order Two-Dimensional Raman Spectroscopy:  A New Direct Probe of the Liquid State,” Int. Rev. in Phys. Chem. 2003, 22(3), 497-532.

123. M.R. Armstrong, J.P. Ogilvie, M.L. Cowan, A.M. Nagy, R.J.D. Miller, “Observation of the Cascaded Atomic-to-Global Length Scales Driving Protein Motion,” Proc. Natl. Acad. Science 2003, 100(9), 4990-4994.

122. K.J. Kubarych, C.J. Milne, R.J.D. Miller, “Heterodyne Detected Fifth-Order Raman Response of Liquid CS2:  ‘Dutch Cross’ Polarization,” Chem. Phys. Lett.  2003, 369(5-6), 635-642.

121. M.R. Armstrong, J.P. Ogilvie, M.L. Cowan, A.M. Nagy, R.J.D. Miller, “Primary Processes of Ligand Dissociation in Heme Proteins,” Ultrafast Phenomena XIII, Springer Series in Chemical Physics, eds., R.J.D. Miller, M.M. Murnane, N.F. Scherer, A.M. Weiner (Springer-Verlag, N.Y.) 2003, 71, 605.

120. J.P. Ogilvie, M.L. Cowan, M.R. Armstrong, A.M. Nagy, R.J.D. Miller, “Diffractive Optics-Based Heterodyne Detected Three-Pulse Photon Echo,” Ultrafast Phenomena XIII, Springer Series in Chemical Physics, eds., R.J.D. Miller, M.M. Murnane, N.F. Scherer, A.M. Weiner (Springer-Verlag, N.Y.) 2003, 71, 571.

119. K.J. Kubarych, C.J. Milne, S. Lin, R.J.D. Miller, “Diffractive Optics Based Heterodyne Detected 6-Wave Mixing:  ‘Dutch Cross’ Fifth-Order Raman,” Ultrafast Phenomena XIII, Springer Series in Chemical Physics, eds., R.J.D. Miller, M.M. Murnane, N.F. Scherer, A.M. Weiner (Springer-Verlag, N.Y.) 2003, 71, 551.

118. B.J. Siwick, J.R. Dwyer, R.E. Jordan, R.J.D. Miller, “Ultrafast Electron Optics:  Propagation Dynamics and Measurement of Femtosecond Electron Packets,” Ultrafast Phenomena XIII, Springer Series in Chemical Physics, eds., R.J.D. Miller, M.M. Murnane, N.F. Scherer, A.M. Weiner (Springer-Verlag, N.Y.) 2003, 71, 322-4.


2002

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117. J.P. Ogilvie, M. Plazanet, G. Dadusc, and R.J. Dwayne Miller, “Dynamics of Ligand Escape in Myoglobin:  Q-band Transient Absorption and Four-Wave Mixing Studies,” J. Phys. Chem. B.  2002, 106, 10460-10467.

116. D. Kramer, B.J. Siwick and R.J. Dwayne Miller, “Ultra-High Density Optical Data Storage:Informative Retrieval an Order of Magnitude beyond the Rayleigh Limit,” Chem. Phys.  2002, 285(1), 73-83.

115. M. Armstrong, P. Platcha, E. Ponomarev, A.M. Nagy and R.J. Dwayne Miller, “Versatile Seven-Femtosecond Pulse Compressor of Parametrically Amplified Pulses Using Adaptive Optics: Studies of the Primary Process in Protein Dynamics,” Appl. Phys. B  2002, 74(9), s127-s132.

114. B.J. Siwick, J.R. Dwyer, R.E. Jordan, R.J.D. Miller “Ultrafast Electron Optics: Propagation Dynamics of Femtosecond Electron Packets,” J. Appl. Phys. 2002, 92(3), 1643-1648.

113. K.J. Kubarych, C.J. Milne, S. Lin, and R.J. Dwayne Miller “Diffractive Optic Implementation of Time- and Frequency-Domain Heterodyne-Detected Six-Wave Mixing,” Appl. Phys. B  2002, 74(9), s107-s112.

112. R. J. Dwayne Miller and R. Memming, “Photophysics and Photochemistry of Semiconductor Interfaces,” Principles of Solar Energy Conversion, Ed. Mary Archer (Oxford Press, 2002).

111. K.J. Kubarych, C.J. Milne, V. Astinov, S. Lin, and R.J. Dwayne Miller, "Diffractive Optics Based Six-Wave Mixing:  Heterodyne Detection of the Full χ(5) Tensor of Liquid CS2," J. Chem. Phys.  2002, 116(5), 2016-2042.

110. R.J. Dwayne Miller, "Mother Nature and the Molecular Big Bang", John C. Polanyi Award Lecture. Can. J. Chem. 2002, 80, 1-24.

109. J. Ogilvie, M.R. Armstrong, M. Plazanet, G. Dadusc and R.J. Dwayne Miller “Myoglobin Dynamics: Evidence for a Hybrid Solid Fluid State of Matter”. J. Luminescence 2002, 94-95, 489-492.


2001

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108. Brad Siwick, O. Kolenko, E. Kumacheva, J. Noolandi, and R. Dwayne Miller, "Polymeric Nonostructured Material for High-Density Three-Dimensional Optical Memory Storage", J. Appl. Phys.  2001, 90(10), 5328-5334.

107. M. Armstrong, P. Plachta, E. Ponomarev and R. J. Dwayne Miller, "Versatile 7-fs Optical Parametric Pulse Generation and Compression by use of Adaptive Optics", Optics Lett. 2001, 26(15), 1152-1154.

106. G. Dadusc, J. Ogilvie, U. Marvet, and R. J. Dwayne Miller, “Diffractive optics-based heterodyne-detected four-wave mixing signals of protein motion: From "protein quakes" to ligand escape for myoglobin”, Proc. Natl. Acad. Sci. USA 2001, 98, 6110-6115.

105. G. Dadusc, J. Ogilvie, U. Marvet, and R. J. Dwayne Miller, “Diffractive Optics Based Nonlinear Optical Studies of Protein Motion: From Inertial Collective Modes to “Protein Quakes””, Analytical Sciences 2001, 227-230.

104. V. Astinov, K.J. Kubarych, C.J. Milne, S. Lin, R.J. Dwayne Miller, "Diffractive optics based two-color six-wave mixing: heterodyne detection of the fifth order Raman response of liquids", Springer Series in Chemical Physics, Ultrafast Phenomena XII  2001, 66, 510-512.



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